Running RNA-seq on CLC
with genes

Gill_GonadM_v9.txt

SCRIPT_DESeq_Oyster_no replication.R


R Console Oyster Gill Gonad.txt

Oyster_GillGondad_NATURE_DESeq.txt

~50 genes different (adjusted p-value)


-------------------

List of ~700 that have p-value <0.05
p05_Oyster_GillGondad_NATURE_DESeq.txt

Gff of diff Expression

DESeq_GillvGonad_p05.gff
& @
http://eagle.fish.washington.edu/cnidarian/DESeq_GillvGonad_p05.gff


-


Scaffold 1009

Some Screen shots from Diff Exp GeneĀ 












Movie of various Diff Expressed Genes and Methylation Patterns
Screen Recording 2.mov




Using Unique hits finding tissue specific genes
Oyster_GillGondad_NATURE_DESeq.txt